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فهرست مطالب arshad javid

  • Waqas Ali *, Syed Mohsin Bukhari, Amina Ayub, Ghulam Qadir, Mudasar Hussain, Mohsin Masood, Naseem Akhtar, Hamad Alam, Laiba Nawaz, Arshad Javid

    The herpetofauna diversity of Pakistan is underestimated due to the country's lack of molecular-based identification. Field surveys were conducted from August 2018 through July 2022 to collect as many as possible specimens from Punjab, Pakistan. A total of 21 species were collected and initially identified by morphological characteristics. The three gene fragments in four amphibian species and seven reptile species were successfully amplified and sequenced. A total of 18 DNA sequences of 11 species representing nine genera and five families were deposited in GenBank, and accession numbers were obtained. Furthermore, phylogenetic analysis was performed through the Neighbor-joining method using 100 bootstrap pseudo-replicates in MEGA X. Closely related toad species, namely Duttaphrynus melanostictus and Duttaphrynus stomatitis, were clearly separated in the tree inferred from Cytb gene sequences. Similarly, conspecific sequences were analyzed for multiple individuals of Platyceps rhodorachis clustered together in the tree inferred from COI gene sequences. In our findings, 16S rRNA appears to be more reliable in identifying amphibian species, while COI has a better success rate in reptile species identification. In our recommendations, molecular-based identification of herpetofauna is necessary nationwide to document any new subspecies.

    Keywords: Mitochondrial DNA, Phylogenetic Analysis, Genetic Divergence, Species Identification, COI}
  • Tooba Latif, Shahzad Ali *, Arshad Javid, Ali Shaikh
    Staphylococcus aureus is gaining worldwide attention because of its substantial impact on public health. The current study aimed to characterize S. aureus strains isolated from wild birds in the Kasur district of Punjab, Pakistan from 2021 to 2022. A total of one hundred samples were collected from five wild bird species. The samples were enriched, inoculated on selective agars and cultured for 24 hr at 37.00 ˚C. All isolates were verified by matrix-assisted laser desorption ionization–time-of-flight mass spectrometry (MALDI-TOF MS) and polymerase chain reaction (PCR) after Gram staining. Positive isolates were screened for phenotypic (Kirby-Bauer disk diffusion and minimum inhibitory concentration s), genotypic antibiotic resistance, and virulence genes. These samples yielded 30 (30.00%) S. aureus isolates, confirmed by polymerase chain reaction utilizing the 16S rRNA gene. Staphylococcus aureus was more prevalent in cloacal samples (16.00%) than oral samples (14.00%). Various S. aureus isolates showed varying degrees of resistance to three different antibiotics. Oxacillin (56.66%; n = 17) and tetracycline (33.33%; n = 10) showed the highest resistance rates with the lowest susceptibility (43.33%; n = 13). In contrast, vancomycin, rifampicin, linezolid, and daptomycin were 100% susceptible. Further disc diffusion study revealed resistance to tetracycline (33.33%), erythromycin (16.66%), and gentamicin (10.00%). The tetK gene was found in 33.33% of wild bird samples, while the ermA gene was found in 16.66% of samples. The aacA-D gene was only found in three (10.00%) isolates. None of the isolates tested positive for virulence genes. In conclusion, S. aureus is carried by wild birds in this area, posing a potentail threat to both humans and animals.
    Keywords: Acca-D, Antibiotic Resistance, Erma, Staphylococcus Aureus, Tetk}
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