mehr ali mahmood janlou
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Background
E-cigarettes have become popular as an alternative to traditional smoking but their long-term health effects, especially regarding cancer risk, are concerning. This review evaluates the potential carcinogenic effects of e-cigarettes, focusing on DNA damage, epigenetic changes, and tumor-promoting pathways that may promote tumor development.
Materials and MethodsA literature search on PubMed, Scopus, and Web of Science databases yielded studies on e-cigarettes and cancer risk from 2010 to 2024. The employed keywords included “e-cigarettes”, “vaping”, “cancer risk”, and “toxic chemicals”. Studies included data on e-cigarette vapor composition and health effects, excluding those on smoking cessation. Data extraction covered study design, population, e-cigarette type, usage, health outcomes, and vapor analysis. Quality was assessed using the Cochrane risk of bias tool and the Newcastle-Ottawa scale.
ResultsResearch indicates that e-cigarettes can cause DNA damage and epigenetic changes that potentially lead to cancer. DNA methylation can alter gene expression and cause mutations, particularly in the respiratory system, increasing cancer risk. Short-term use of e-cigarettes induces lung cancer-related tumor-promoting factors and metastasis in small bronchial tubes. Nicotine inhalation from e-cigarettes can promote tumor growth by stimulating angiogenesis and inhibiting apoptosis, despite nicotine not being a carcinogen. E-cigarette vapor contains known carcinogens like formaldehyde and acetaldehyde, further contributing to cancer risk.
ConclusionExposure to e-cigarette vapor causes gene expression changes and epigenetic damage similar to those from combustible cigarette smoke, potentially leading to cancer. DNA methylation can change gene expression and cause mutations, especially in respiratory cells.
Keywords: Cancer, DNA Damage, E-Cigarettes, Epigenetic, Tobacco -
Context:
Nanotechnology, specifically nanoparticles, has revolutionized cancer therapy through enhanced drug delivery, precise imaging, and accurate diagnosis. Their ability to target cancer cells directly with minimal side effects makes them especially promising for treating colorectal cancer (CRC), allowing for more effective treatments.
MethodsA systematic literature review was conducted across multiple databases (PubMed, Scopus, Embase, Cochrane, Web of Science, Google Scholar) using MeSH terms such as nanoparticles, cancer, drug delivery, and target cells. The objectives of this review were to examine the effectiveness of nanoparticle-based drug delivery systems, evaluate their targeting mechanisms, and assess their impact on treatment outcomes for CRC. Study eligibility, participant inclusion criteria, and specific intervention types were critically analyzed to ensure a comprehensive understanding.
ResultsNanoparticle-based systems have demonstrated significant promise in shrinking tumors, improving drug accumulation at the tumor site, and facilitating easier surgical removal. These systems enhance drug efficacy, reduce toxicity, and overcome biological barriers in CRC, particularly through the use of pH-responsive and thermoresponsive nanoparticles.
ConclusionsThe application of nanoparticles for drug delivery represents a safe and effective treatment option, demonstrating improved targeting, reduced side effects, and enhanced therapeutic outcomes. However, further research is necessary to evaluate the long-term safety, efficacy, and scalability of these systems, alongside their optimization for clinical use in personalized treatments.
Keywords: Nanoparticle, Cancer, Oncogene, Target Cell -
مقدمه
مهار آنزیم های کلیدی در باکتری هایی که فشار تکاملی پایینی اعمال می کنند می تواند یک استراتژی توسعه دارویی برای مقاومت آنتی بیوتیکی باکتریایی باشد. سورتازآ یک ترانس پپتیداز است که به طور گسترده در مطالعات مهاری عفونت باکتریایی مورد استفاده قرار می گیرد. این آنزیم یک عملکرد کلیدی در تعاملات بین استافیلوکوکوس اورئوس و میزبان دارد و به عنوان یک هدف امیدوارکننده برای توسعه دارویی باکتری های مقاوم در نظر گرفته شده است. تا به امروز، برخی از مهارکننده های سورتازآ کشف شده اند که بیشتر آنها از ترکیبات فلاونوئیدی مانند مایرسیتین مشتق شده اند.
هدفاز آنجایکه روش های محاسباتی برای نظارت بر رفتار مولکول های زیستی در سطح میکروسکوپی دقیق تر و مقرون به صرفه تر هستند، لذا در این تحقیق هدف ما اینست که با استفاده از روش های محاسباتی مولکول هایی مشابه اما با قدرت اتصال و مهاری بالاتر نسبت به مایرستین یافته شود.
مواد و روش هادر این مطالعه، ما از روش های محاسباتی مانند غربالگری مجازی مبتنی بر ساختار، اتصال مولکولی و شبیه سازی MD بهره جستیم. رویکرد اتصال مولکولی برای درک برهم کنش های پروتئین- لیگاند و ثابت مهار از نظر میل ترکیبی مورد استفاده قرار گرفت. برای نظارت بر تغییرات ساختاری آنزیم Srt A ، از تکنیک شبیه سازی MD استفاده شد. پس از مطالعات شبیه سازی MD، رویکرد MM-PBSA برای تفسیر انرژی اتصال آزاد استفاده شد.
نتایجابتدا کتابخانه شیمیایی Chemspider را به روش جستجوی مشابه که در آن مایرسیتین به عنوان مولکول مرجع قرار داده شد، غربال گردید. مرحله دوم غربالگری با استفاده از نرم افزار PyRx صورت گرفت بطوریکه 10 ترکیب برتر بر اساس پتانسیل بازدارندگی آنها از مجموعه لیگاندهای حاصل از مرحله قبل به دقت انتخاب شدند. این ترکیبات در معرض Autodock4.2 برای داکینگ مولکولی قرار گرفتند. که در نتیجه آن مشاهده گردید که ترکیب Chemspider ID=73945561 از قدرت مهاری بالاتری نسبت به مایرستین برخوردار است. برای بررسی پایداری و کارایی حالت اتصال لیگاند، Srt A آزاد، کمپلکس های آن با مایرستین و بهترین ترکیب منتخب، تحت شبیه سازی دینامیک مولکولیns 50 قرار گرفتند. نتایج شبیه سازی MD نشان داد که ترکیب 73945561 پروفایل ها و برهمکنش اتصال بهتری نسبت به مایرستین به عنوان یک بازدارنده مرجع دارد، و رفتار ناپایدار پیوسته در کمپلکس داکینگ مشاهده شد.
نتیجه گیریدر مجموع، ترکیب 73945561 ممکن است به عنوان یک بازدارنده جدید عمل کند یا دارای داربستی برای بهینه سازی بیشتر به سمت طراحی مهارکننده های SortA قوی تر باشد. پیشنهاد می گردد که توسعه این مهارکننده می تواند یک استراتژی اساسی برای مهار باکتریهای مقاوم باشد.
کلید واژگان: مهارکننده های سورتازآ, استافیلوکوکوس اورئوس, داکینگ مولکولی, شبیه سازی دینامیک مولکولیIntroductionInhibition of key enzymes in bacteria that exert low evolutionary pressure can be a drug development strategy for bacterial antibiotic resistance. Sortase A (Srt A) is a transpeptidase that is widely used in site-specific protein modification. This enzyme has a key function in the interactions between Staphylococcus aureus and the host and has been considered a promising target for the drug development of resistant bacteria. To date, some Srt A inhibitors have been discovered most of them are derived from flavonoid compounds, like myricetin.
AimSince computational methods for monitoring the behavior of biomolecules at the microscopic level are more accurate and cost-effective, therefore, in this research, our goal is to use computational methods to find similar molecules but with higher binding and inhibitory effect than myricetin.
Materials and MethodsIn this study, we used computational methods such as structure-based virtual screening, molecular docking, MM-PBSA approach, and MD simulation. A molecular docking approach was used to understand protein-ligand interactions and inhibition constants in terms of affinity. MD simulation technique was used to monitor the conformational changes of Srt A enzyme. After the MD simulation studies, the MM-PBSA approach was used to interpret the binding free energy.
ResultsFirst, Chemspider's chemical library was screened by the "Similarity search" method, in which myricetin was placed as a reference molecule. The second stage of screening was done using PyRx software, so that the top 10 compounds were carefully selected based on their inhibitory potential from the set of ligands obtained from the previous stage. These compounds were subjected to Autodock4.2 for molecular docking. As a result, it was observed that compound-73945561 has a higher inhibitory effect than myrsteine. To investigate the stability and efficiency of ligand binding mode, free Srt A, its complexes with myrsteine and the best selected compound were subjected to 50s molecular dynamics simulation. MD simulation results showed that compound-73945561 had better binding profiles and interactions than myrsteine as a reference inhibitor, and steadily unstable behavior was observed in the docking complex.
ConclusionOverall, compound-73945561 may serve as a new inhibitor or provide a scaffold for further optimization toward the design of more potent SortA inhibitors. The development of such inhibitors would be an essential strategy against resistant bacteria.
Keywords: Srt A Inhibitors, Staphylococcus Aureus, Molecular Docking, Molecular Dynamics Simulation -
Background
Cefiderocol is a siderophore cephalosporin with unique cell-penetrating abilities against multidrug-resistant (MDR) Gram-negative bacteria, especially carbapenem-resistant strains. This study aimed to evaluate the prevalence and susceptibility profiles of Cefiderocol on carbapenem-resistant uropathogenic Escherichia coli and Klebsiella pneumoniae isolates among hospitalized patients.
MethodsOne hundred twenty-nine patients more than 72 h admitted to hospitals participated from Feb. 2021 to Dec. 2022. Urine samples were examined to identify uropathogenic K. pneumoniae and E. coli isolates based on microscopic morphology, cultural and biochemical methods. The carbapenemase production in the isolates was evaluated using modified Hodge tests and PCR. The MIC of Cefiderocol against carbapenemase-producing isolates was evaluated according to CLSI-2021 guidelines.
ResultsAccording to phenotypic and genotypic tests, among forty-two E. coli isolates (71.19%) were carbapenemase positive, 38 isolates had the blaOXA gene (90.47%), and among twenty-four K. pneumoniae isolates 96% contained the blaKPC gene. In MIC determination 55.24% of carbapenem-resistant E. coli isolates were inhibited with ≤0.5 μg/ml of Cefiderocol, while only two strains (8.33%) of K. pneumoniae isolates showed resistance to the Cefiderocol (MIC90=2 μg/ml).
ConclusionThe present results demonstrate that the emergence of carbapenem-resistant uropathogenic bacteria poses a critical health threat to society. Based on the results, Cefiderocol demonstrated efficacy against carbapenem-resistant clinical isolates at low concentrations.
Keywords: Cefiderocol, Carbapenemase, Escherichia Coli, Klebsiella Pneumonia -
ذرت یکی از گیاهان ارزشمند زراعی است که تنوع، سازگاری و ارزش غذایی ، آن را در ردیف مهمترین گیاهان زراعی جهان قرار داده است. محلولپاشی کود های نیتروژنه ، روی و پتاسیم بر گیاه ذرت می تواند اطلاعات بسیار مناسبی را در مورد تاثیر مصرف کود ازته و روی و پتاسیم در شرایط اقلیمی استان گلستان در اختیار زارعین و محققین قرار دهد.
هدفبا توجه به اثرات دارویی کاکل ذرت و اهمیت آن در پزشکی و وجود مواد موثره خاص در این ارتباط در ابریشم ذرت به نظر می رسد که کمیت و کیفیت آنها تحت تاثیر کاربرد نیتروژن ، روی ، پتاسیم قرار می گیرد . لذا بررسی این تغییرات از اهدف کاربردی این پژوهش می باشدمود و
روش هابه منظور ارزیابی تغییرات حاصل از منابع نیتروژن، روی، پتاسیم و کاربرد توام آن ها بر برخی صفات مورفوفیزیولوژیکی ذرت هیبرید سینگل کراس 704، آزمایشی به صورت طرح بلوک کامل تصادفی با چهار تکرار در بهار و تابستان سال 1398 در استان گلستان در منطقه ای واقع در شهر مزرعه کتول انجام شد. تیمارها شامل کود نیتروژن (اوره) ، پتاسیم (سولفات پتاسیم)، روی (سولفات روی) به تنهایی، کاربرد توام نیتروژن + پتاسیم، کاربرد توام نیتروژن + روی، کاربرد توام روی + پتاسیم و کاربرد توام نیتروژن + پتاسیم + روی در مقابل شاهد بود.
نتایجنتایج نشان داد صفات مورد مطالعه تحت تاثیر منابع کودی قرار گرفتند و در سطح احتمال یک درصد معنی-دار شدند. تیمارهای مورد بررسی اثر معنی داری بر صفات ارتفاع تا اولین بلال، تعداد ردیف، طول بلال و قطر بلال در زمان رسیدگی کامل در سطح احتمال یک درصد داشتند. با کاربرد عناصر روی، نیتروژن و پتاسیم افزایش معنی-داری بر محتوای ترکیبات فنلی برگ، ابریشم و دانه ذرت مشاهده گردید. فلاونویید برگ، ابریشم و دانه تحت تاثیر تامین کودهای نیتروژن (N) ، روی (Zn) ، پتاسیم (K) و کاربرد توام آنها قرار گرفت. آنتوسیانین برگ در تیمارهای محلول پاشی با کود تکی پتاسیم، به واسطه ایجاد شرایط بهینه، بیشتر انرژی جاری گیاه در جهت رشد، توسعه و افزایش عملکرد گیاهان تحت تیمار خرج شد، لذا بیوسنتز و تولید آنتوسیانین در برگ ذرت با کاربرد تکی پتاسیم کمتر بود ولی آنتوسیانین ابریشم و دانه با کاربرد تکی پتاسیم و کاربرد توام پتاسیم+نیتروژن، پتاسیم + روی، پتاسیم + نیتروژن + روی افزایش معنی داری را نسبت به شاهد نشان داد.
نتیجه گیریبا توجه به نتایج به دست آمده، کاربرد توام کودها در بهبود صفات مورفوفیزیولوژیکی و بهبود عملکرد گیاهان توصیه می گردد.
کلید واژگان: روی, ذرت, ترکیبات فنلی, آنتوسیانین, ابریشم, فلاونوییدIntroductionCorn is one of the valuable agricultural plants whose diversity, adaptability and high nutritional value have placed it among the most important agricultural plants in the world. Foliar spraying of nitrogen, zinc and potassium fertilizers on corn plants can provide farmers and researchers with very good information about the effect of nitrogen, zinc and potassium fertilizer consumption in the climatic conditions of Golestan province.
AimConsidering the medicinal effects of corn cob and its importance in medicine and the presence of special effective substances in this connection in corn silk, it seems that their quantity and quality are affected by the use of nitrogen, zinc, and potassium. Therefore, examining these changes is one of the practical goals of this research.
Materials and methodsIn order to evaluate the changes resulted from nitrogen, zinc, potassium and their simultaneous application were done on some morphophysiological traits of single cross 704 hybrid maize as a randomized complete block design with four replications in spring and summer of 2019 in Golestan province, the Katoul farm. Treatments included nitrogen(N), potassium(P), zinc(Z) fertilizer and combined application of nitrogen+potassium(NP), nitrogen+zinc(NZ), potassium+zinc(PZ) and their combined application of nitrogen+potassium+zinc(NPZ) with control. The results showed the traits were affected by fertilizer sources significantly (p≤ 0.01).
ResultsThe studied treatments had a significant effect on the traits of height to the first corn, number of rows, ear length and ear diameter at the time of full ripening at the probability level of (p≤ 0.01). With the application of zinc, nitrogen and potassium elements, a significant increase in the content of phenolic compounds of leaves, silk and corn seeds was observed. The flavonoids of leaves, silk and seeds were influenced by the supply of nitrogen (N), zinc (Zn), potassium (K) fertilizers and their simultaneous application. Leaf anthocyanin in foliar spraying treatments with single potassium fertilizer, due to creating optimal conditions, most of the current energy of the plant was spent in the direction of growth, development and increasing the yield of treated plants, so the biosynthesis and production of anthocyanin in corn leaves with single application of potassium was less, but silk anthocyanin And the seed with single application of potassium and simultaneous application of potassium+nitrogen, potassium+zinc, potassium+nitrogen+zinc showed a significant increase compared to the control.
Conclusionaccording to the obtained results, the simultaneous application of fertilizers is recommended to increase the morpho-physiological traits and yield of plants.
Keywords: Zinc, corn, flavonoid, Silk, Anthocyanin, phenolic compounds -
MiR-21 is a critical small regulatory RNA involved in various cellular processes such as cell cycle, apoptosis, migration, and differentiation of stem cells. It is significantly upregulated in CRC cell lines and tissue samples, acting as a biomarker and playing an important role in the pathogenesis of CRC. MiR-21 targets and downregulates tumor suppressor genes such as PDCD4, which are part of the PI3K- mTOR pathway. The inverse relationship between miR-21 and PDCD4 expression highlights the miR-21 role in CRC progression. Research shows that miR-21 is upregulated in human CRC cell lines and tissue samples, correlating with advanced clinical stages, lymph node metastasis, and poor prognosis. This regulation highlights the potential of miR-21 as a biomarker for the early detection of CRC and as a therapeutic target for developing targeted therapies. MiR-21 regulates several CRC-related target genes, highlighting its role in cancer initiation, transformation, invasion, and metastasis. These findings provide valuable insights into miR-21's role in cancer pathogenesis and its potential clinical applications.
Keywords: Colorectal Cancer, Mir-21, Mirna, Oncogenic, Genetics Factor -
CP47 is one of the essential components of photosystem II (PSII) in green plants, green algae, and cyanobacteria; which is involved in the light reactions of photosynthesis. Various studies have shown that the binding of the extrinsic protein of 33 kDa (PsbO) to the large extrinsic loop of CP47 (E loop) is an essential photoautotrophic activity of the PSII complex. Moreover, the deletion of the amino acids between Gly-351 and Thr-365 within loop E failed to assemble stable PSII centers. In this study, using computational methods, the effect of Phenylalanine (Phe) mutation at position 363 on Synechocystis sp. PCC 6803 CP47 was investigated and then the mutant model was compared with the native one. Because the experimental 3D structure of Synechocystis sp. PCC 6803 CP47 and PsbO proteins are not available in the Protein Data Bank (PDB), the 3D structure of these proteins was modeled by homology modeling. After refining and energy minimization, the quality of protein geometry was assessed by different criteria such as PROCHECK and ProSA. Then, structural analysis of mutant and native models was performed with Molecular Dynamic (MD) simulation and docking method. The analysis of results obtained from MD simulation shows that F363R mutation affects the flexibility of some regions and especially leads to an increase in mutation region and changes the conformation of CP47. In addition, the results of docking studies indicate that F363R mutation can decrease buried surface area (BSA) at the interface region and decrease the binding energy of CP47 and PsbO. These data reinforce our hypothesis that an increase of flexibility at the position of F363 in the large extrinsic loop of CP47 may be an important factor in reducing interaction between CP47 and PsbO extrinsic protein and then water oxidation. oxidation.
Keywords: Photosystem II, CP47, Mutation, Molecular dynamic simulation, Docking -
ظهور برخی جهش ها در دامنه اتصال گیرنده ویروس کوید 19 (SARS-CoV-2 (RBD)) می تواند به دلیل تغییرات ساختاری و افزایش پایداری پروتیین سنبله (spike protein)، باعث گسترش و افزایش بیماری زایی در انسان شود. با توجه به شکل گیری سویه های مختلف SARS-CoV-2 توسط جهش ها و تاثیر فاجعه بار آنها بر سلامت عمومی، مطالعه تاثیر جهش توسط دانشمندان و محققان در سراسر جهان اجتناب ناپذیر است. طبق شواهد موجود، نوع S494P در چندین سویه SARS-CoV-2 از میشیگان، ایالات متحده مشاهده شده است. برای بررسی اینکه چگونه جهش طبیعی S494P میل اتصال گیرنده را در RBD تغییر می دهد، ما تجزیه و تحلیل ساختاری پروتیین های سنبله نوع وحشی و جهش یافته را با استفاده از برخی روش های بیوانفورماتیک و ابزارهای محاسباتی انجام دادیم. نتایج نشان می دهد که جهش S494P باعث افزایش پایداری پروتیین سنبله می شود. همچنین، بررسی داکینگ مولکولی با استفاده ازHADDOCK تمایل اتصال بالاتری به hACE2 برای سنبله جهش یافته نسبت به نوع وحشی را نشان می دهد که احتمالا به دلیل افزایش ساختارهای ثانویه رشته بتا و Turn است که باعث افزایش سطح قابل دسترسی سطح (SASA) و احتمال برهمکنش می شود. تجزیه و تحلیل S494P به عنوان یک جهش مهم RBD ممکن است نظارت مستمر جهش های سنبله را برای کمک به توسعه داروها و واکسن های COVID-19 فراهم کند.کلید واژگان: کوید 19, پروتئین سنبله, S494P, داکینگ, شبیه سازی دینامیک مولکولیThe emergence of some mutations in the SARS-CoV-2 receptor binding domain (RBD) can increase the spread and pathogenicity due to the conformational changes and increase the stability of Spike protein. Due to the formation of different strains of SARS-CoV-2 by mutations, and their catastrophic effect on public health, the study of the effect of mutations by scientists and researchers around the world is inevitable. According to available evidence, the S494P variant is observed in several SARS-CoV-2 strains from Michigan, USA. To investigate how the S494P natural mutation alters receptor binding affinity in RBD, we performed structural analysis of wild-type and mutant spike proteins using some bioinformatics and computational tools. The results show that S494P mutation increases the spike protein stability. Also, applying docking by HADDOCK displayed higher binding affinity to hACE2 for mutant spike than wild type possibly due to the increased β-strand and Turn secondary structures which increases surface accessibly surface area (SASA) and the chance of interaction. The analysis of S494P as a critical RBD mutation may provide the continuing surveillance of spike mutations to aid in the development of COVID-19 drugs and vaccines.Keywords: SARS-CoV-2, Spike protein, RBD, S494P, MD simulation, docking
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In recent years, enzymatic activity of tyrosinase has been the focus of investigation due to its potential applications in medicine, agriculture and cosmetics. Tyrosinase, entitled polyphenol oxidase, is a key enzyme that catalyzes synthesis of melanin in plants, microorganisms and mammalian cells. Presence of some antioxidants can delay or inhibit the activity of this enzyme as well. In this survey, molecular docking calculation method using Autodock 4.0 software for prediction of binding energy of the protein with some antioxidant ligands was executed. The pose with the lowest energy of binding or inhibition constant was extracted at 298.15 K for kojic acid. Number of conformations in the cluster of rank was 13. The first and second boxes free energy and the inhibition constant were as follows: -5.60 kcalmol-1, 78.99 µM and -3.32 kcalmol-1, 3.66 µM, respectively. Since the first box presented a lower value of free energy, it was considered as the best mode of structure of kojic acid and the protein docking for further analysis. Thus, our present study could contribute to development and discernment of tyrosinase inhibitors in order to prevent hyper pigmentation.Keywords: Tyrosinase, Molecular Docking, Kojic Acid, Binding Energy, Inhibition Constant
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