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عضویت
فهرست مطالب نویسنده:

farid azizi jalilian

  • Iraj Sedighi, Roya Raeisi, Jalaleddin Amiri*, Zohreh Shalchi, Manoochehr Karami, Farid Azizi Jalilian, Ali Teimoori, Nastaran Ansari, Jalaledin Bathaei, Mohammad Hashemi
    Background

     Investigating the prevalence of the coronavirus disease 2019 (COVID-19) infection in asymptomatic children who have been in close contact with symptomatic individuals is instrumental for refining public health approaches, protecting vulnerable populations, and mitigating the broader impact of the pandemic. Accordingly, this study aimed to evaluate the incidence of COVID-19 infection in asymptomatic children who had been in close contact with parents exhibiting COVID-19 symptoms.

    Study Design: 

    A cross-sectional study.

    Methods

     The present cross-sectional study was conducted on 175 asymptomatic children who had been in close contact with COVID-19 confirmed cases in Hamadan County from March 2021 to August 2021. Reverse transcription polymerase chain reaction (RT-PCR) testing was performed on all asymptomatic children who had been in close contact with an individual with COVID-19. Furthermore, multiple logistic regressions were conducted to determine the predictors of COVID-19 transmission from family members to children.

    Results

     Out of the 175 children in close contact with index cases, 53 (30.29%) tested positive for COVID-19 through PCR. Regarding factors related to the index case, male cases (Adjusted odds ratio [AOR]=2.29; 95% confidence interval [CI]: 1.03-5.09, P=0.041), rural dwellers (AOR=3.22; 95% CI: 1.02-10.16, P=0.046), illiterate cases (AOR=8.45; 95% CI: 1.76-40.65, P=0.008), and cases presenting with nasal congestion symptoms (AOR=9.12; 95% CI: 2.22-37.40, P=0.002) were more prone to transmitting the virus to children who had close contact with them.

    Conclusion

     The findings of the present study suggested that asymptomatic COVID-19 infection in household contacts is significant in children who were in close contact with a COVID-19-positive patient. Therefore, it is crucial to continue to monitor this group closely.

    Keywords: Asymptomatic, Child, Transmission, COVID-19
  • Farhad Farahani, Majid Vafaei Rad, Homa Naderifar, Elnaz Shariatpanahi, Roya Najafi-Vosough, Farid Azizi Jalilian *

     

    Background and Aim:

     Inner ear infection with some viruses may be one of the possible causes of Sensorineural Hearing Loss (SNHL). This study aims to determine the frequency of Herpes Simplex Virus 1 and 2 (HSV-1, HSV-2) and Cytomegalovirus (CMV) in perilymph and peripheral blood samples of cochlear-implanted children.

    Methods: 

    In this cross-sectional study, 30 children with severe-to-profound SNHL (aged 1.1–5 years) underwent cochlear implantation surgery. During surgery, their perilymph and peripheral blood samples were collected. The samples were analyzed separately for the presence of herpes HSV-1, HSV-2, and CMV by real-time Polymerase Chain Reaction (PCR) method. The load of IgG and IgM antibodies against these viruses was determined using the Enzyme-Linked Immunosorbent Assay (ELISA) method.

    Results: 

    The frequency of CMV in perilymph samples was 16.7% (5 patients) and in peripheral blood samples was 3.3% (1 patient). The IgG antibody against CMV and HSV- 1 was positive in 80% and 46.7% of the patients, respectively. The IgM antibody against CMV was positive in 10%. The mean IgM serum antibody load against HSV-1, HSV-2, and CMV was 2.70, 1.70, and 5.47, respectively, and the mean IgG antibody load against these viruses was 56.07, 2.50, and 23.67, respectively.

    Conclusion: 

    The IgG test is positive in cochlear-implanted children with CMV in their perilymph samples, and the CMV genome is not present in their peripheral blood. This may indicate the previous presence of this virus in the ear and its role in hearing loss.

    Keywords: Sensorineural Hearing Loss, Perilymph Fluid, Cytomegalovirus, Herpes Simplex
  • Ali Jamshidi-Zad, Dara Dastan, Mohammad Fallah, Farid Azizi-Jalilian, Mohammad Matini *
    Background
    Trichomoniasis, caused by Trichomonas vaginalis protozoan, is the most common nonviral sexually transmitted infections worldwide. Although metronidazole and tinidazole are the only approved drugs for treatment, drug-resistant cases of infection are on the rise. The aim of the study was the evaluation of antitrichomonal potential of Piper nigrum and limonene. The phytochemical profile of P. nigrum oil was also investigated.
    Methods
    The parasites were treated in vitro with essential oil and different extracts of P. nigrum seed and limonene using microtiter plate method. The oil analysis of P. nigrum was also evaluated by gas chromatography-mass spectrometry and gas chromatography-flame ionization detector. Furthermore, the cytotoxicity assay of P. nigrum oil and limonene were screened on Vero cell line by MTT method.
    Results
    The tested P. nigrum fractions were able to kill 100% of Trichomonas trophozoites at MLC concentration and reduce the trophozoite viability at sub-MLC and lower concentrations. After 48 hours exposure, the most potent fraction was the n-hexane extract with MLC of 78 µg/ml and followed by the essential oil and methanol extract with MLC of 156 µg/ml, limonene (MLC=1250 µg/ml), and then, aqueous extract with MLC value of 25 mg/ml. Also according to cytotoxicity assay, P. nigrum oil was less toxic to Vero cell than limonene, with a selectivity index of 13.2 and 2.04, respectively.
    Conclusion
    This study clearly demonstrated the trichomonacidal potential of P. nigrum. Thus, P. nigrum fractions can be considered promising antiprotozoal agents and the basis for further development to discover new phytochemicals compounds.
    Keywords: Essential oil, Extract, Limonene, Piper nigrum, Trichomonas vaginalis
  • Reyhaneh Jashaninejad, Mohammad Mirzaei, Manoochehr Karami *, Fariba Keramat, Alireza Madrakian, Jalal Bathaei, Farid Azizi Jalilian

    All age groups are at risk of contracting and dying of Coronavirus disease (COVID-19). However, older people and those with underlying conditions, comorbidities and disability levels are at higher risk of developing a serious illness, especially those living in enclosed spaces such as nursing homes and care centers, are more vulnerable to getting this disease, which can become fatal during this pandemic. Other reasons that make them more susceptible include population density, sharing equipment, poor public health measurements and infection controlling and close contact with roommates, which may all these factors increase the transmission rate and risk of infection. Therefore, we aimed to investigate the outbreak of COVID-19 in a chronic psychiatric rehabilitation center called Behboud center in Hamadan, west of Iran. It is a rehabilitation center with 85 women clients and 16 staff.

    Keywords: SARS-CoV-2, COVID-19, Outbreak, Coronavirus, Disabled persons
  • ایمان اولیائی، نسترن سعادت، شهاب محمودوند، حسین وکیلی مفرد، سلمان خزایی، نسترن انصاری، راضیه امینی، فرید عزیزی جلیلیان*
    زمینه و اهداف

      در دسامبر 2019 بیماری تنفسی (پنومونی) همراه با تب و خلط در دستگاه تنفسی به نام کووید-19 کشف شد که دارای قابلیت با انتقال انسان به انسان بود. سرم آمیلوئید A (SAA) یک پروتئین پلاسمایی فاز حاد است که از نظر تشخیصی در شرایط پاتولوژیک مانند بیماری های ویروسی برتر از تست CRP است. این مطالعه با هدف تعیین نقش احتمالی SAA در تشخیص زودهنگام بیماری کووید-19 انجام شد.

    مواد و روش کار

      برای شناسایی مطالعات مرتبط، پایگاه های اطلاعاتی بین المللی شامل PubMed، Scopus، Science Direct، Cochrane، Embase، Web of Science و Google Scholar را بدون محدودیت زمانی تا ژوئن 2021 جستجو کردیم. همچنین، فهرست مرجع مطالعات مربوطه برای یافتن تمامی مقالات موجود در این زمینه به صورت جداگانه بررسی شده است.

    یافته ها

      در مجموع 394 مقاله مرتبط از جستجوی اولیه شناسایی شد. پس از حذف موارد تکراری و مطالعه عنوان، چکیده و بررسی متن کامل، 6 مطالعه وارد فراتحلیل شدند. تفاوت معنی داری بین میانگین SSA بین بیماران مبتلا به فرم شدید بیماری در مقایسه با گروه های غیر شدید (SMD=-0.91, 95% CI: 1.18-1.59, -0.23) و با گروه کنترل (SMD=4.68, 95% CI: 1.18, 8.18) وجود داشت. نتایج آزمون beggs و egger نشان می دهد که هیچ شواهدی از سوگیری انتشار در SMD گزارش شده وجود ندارد.

    نتیجه گیری

      نتیجه این مطالعه نشان می دهد که SAA ممکن است به طور بالقوه برای تمایز بین بیماران کووید 19 شدید و متوسط ​​مورد استفاده قرار گیرد، در نتیجه می توان از آن برای پیش بینی پیشرفت بیماری استفاده کرد.

    کلید واژگان: پروتئین سرم آمیلوئید A, تشخیص زودهنگام, بیماری کووید 19
    Iman Owliaee, Nastaran Saadat, Shahab Mahmoudvand, Hossein Vakilimofrad, Salman Khazaei, Nastaran Ansari, Razieh Amini, Farid Azizi Jalilian*
    Background and Aim

     In December 2019, human-to-human transmission of respiratory illness (pneumonia) with fever and sputum was discovered in the respiratory tract, called COVID-19. Serum amyloid A (SAA) is an acute-phase plasma protein that is considered to be diagnostically superior to CRP in pathological conditions such as viral diseases. Therefore, the study question in this review is whether SAA as an indicator is involved in the early diagnosis of COVID disease.

    Materials and Methods

     To identify related studies, we systematically searched international databases, including PubMed, Scopus, Science Direct, Cochrane, Embase, Web of Science, and Google Scholar search engine, without restriction on time until June 2021. Also, the Reference list of relevant studies was reviewed separately to find all existing articles in this field. Summary standardized mean difference (SMD) was estimated using random effects meta-analysis.

    Results

    A total of 394 potentially relevant articles were identified from the initial search. After removing the duplicates and reading the title, abstract and full-text review, six studies were entered into the meta-analysis. There was a significant difference between the means of SSA among patients with a severe form of the disease compared to non-sever groups (SMD=-0.91, 95% CI: 1.18-1.59, -0.23) and with the control group (SMD=4.68, 95% CI: 1.18, 8.18). The Beggs and egger test results indicated no evidence of publication bias in the reported SMD.

    Conclusion

     The result of our work indicates that SAA might potentially be used for the early diagnosis of COVID disease, but more studies are needed.

    Keywords: Early Diagnosis, COVID-19 disease, SAA, Serum amyloid A protein
  • Faezeh Fouladvand, Farid Azizi Jalilian, Peyman Bemani, Masoud Saidijam, Razieh Amini
    Introduction
    The phage display method is a technology that enables the expression of exogenous polypeptides on the surface of bacteriophage particles. Phage titration and ELISA are applied to measure helper phage particles or polypeptide bearing phages and also evaluation the interaction between polypeptide bearing phages and coated antigens, respectively. Although several procedures have been introduced to perform phage titration and ELISA, they face some limitations, such as being time-consuming, expensive, and low reproducibility.
    Materials and Methods
    We developed a new system called EnzyPha by engineering the M13KO7 expressing Secreted Acid Phosphatase of Mycobacterium tuberculosis (SapM enzyme) on its pIX protein for applying in colorimetric phage titration and ELISA methods. To evaluate the idea, colorimetric phage titration and ELISA were performed and compared to the traditional methods.
    Results
    SapM enzyme was expressed on the pIX protein of M13KO7 properly. The colorimetric phage titration and phage ELISA showed better and comparable results against the traditional approaches.
    Conclusions
    The results showed that the proposed model would titrate phages more sensitively than the plating titration method through a shorter timeframe. Moreover, it could be a better alternative to the routine phage ELISA due to time-saving, cost-effectiveness, and higher sensitivity.
    Keywords: phage display, Helper phage, Phage titration, Phage ELISA
  • Salman Khazaei, Saeid Bashirian, Farid Azizi Jalilian, Alireza Soltanian, Jalal Bathaei, Mohammad Mirzaei, Ali Zahiri, Ali Teimoori, Nastaran Ansari, Iraj Sedighi, Manoochehr Karami *, Sepideh Zareian, Rashid Heidarimoghadam
    Background
    The risk for transmission of COVID-19 to people in close contact with infected people, especially healthcare workers, has not been well estimated. Therefore the present study was conducted to assess the household secondary attack rate (SAR) of COVID-19 among healthcare workers and related factors.
    Materials and Methods
    The present prospective case-ascertained study was conducted on 202 healthcare workers with confirmed COVID-19 in Hamadan, diagnosed from March 1, 2020, to August 20, 2020. For households with close contact with the index case, RT-PCR was performed regardless of symptoms. We defined SAR as the proportion of secondary cases from the total contacts that live in the index case household. SAR was reported as a percentage and 95% confidence interval (CI). Multiple logistic regression was performed to explore the predictors of COVID-19 transmission of index cases to their households.
    Results
    We found 36 secondary cases out of 391 household contacts with laboratory confirmation (RT-PCR), representing a household SAR of 9.2% (95% CI: 6.3, 12.1). Among factors related to the family member, female gender (OR: 2.9, 95% CI: 1.2, 6.9), being the patient's spouse (OR: 2.2, 95% CI: 1.0, 4.6), and living in the apartment (OR: 2.78, 95% CI: 1.24, 6.23), and among factors related to index cases, hospitalization (OR: 5.9, 95% CI: 1.3, 26.9) and caught (OR: 2.4, 95% CI: 1.1, 5.2) were the significant predictors of disease transmission to other family members (P<0.05).
    Conclusion
    The findings of this study suggest that the SAR is remarkable in household contacts of infected healthcare workers. Some characteristics of family members of the index case, including female gender, being the patient's spouse, and living in the apartment, and some characteristics of the index case, including hospitalization and caught, were associated with the increased SAR.
    Keywords: Secondary attack rate, COVID-19, Healthcare worker
  • Ebrahim Jalili, Salman Khazaei, Afshin Mohammadi, Fariba Keramat, Seyed Hamid Hashemi, Saeid Bashirian, Toos Kiani, Farid Azizi Jalilian, Samereh Ghelichkhani, Manoochehr Karami, Maryam Farrokhi, Rashid Heidarimoghadam, Tahereh Abbasi Garavand, Ebrahim Daneshyar, Mohammad Abbasi *
    Background
    Due to the critical condition of COVID-19, it is necessary to evaluate the efficacy of administrating convalescent plasma to COVID-19 patients. Therefore, we decided to design a clinical trial to investigate the effect of convalescent plasma of patients recovered from COVID-19 on the treatment outcome of COVID-19-infected patients.
    Materials and Methods
    In this parallel randomized controlled clinical trial, patients in the intervention group received standard treatment plus convalescent plasma of patients recovered from COVID-19. We allocated 60 patients to each treatment group through balanced block randomization. Then, COVID-19 outcomes, vital signs, and biochemical parameters were compared between the two treatment groups by the independent t test and ANCOVA.
    Results
    The mean age (SD) of the patients in the intervention and standard treatment groups was 52.84 (15.77) and 55.15 (14.34) years, respectively. Although patients in the intervention group reported more hospitalization days (11.45±5.86 vs. 10.42±6.79), death rates (26.67% vs. 18.13%), ICU admission (45 vs. 41.67%), and ARDS (11.67% vs. 3.33%), these differences were not statistically significant (P>0.05). Moreover, the two groups were homogenous in vital signs and biochemical parameters before and after treatment (P>0.05).
    Conclusion
    The present study indicated that convalescent plasma therapy has no significant effect on the survival, hospitalization, and ICU admission of COVID-19 patients.
    Keywords: COVID-19, Convalescent Plasma Therapy, Randomized Clinical Trial
  • شهاب محمودوند، راضیه امینی*، فرید عزیزی جلیلیان، مجتبی هدایت یعقوبی، معصومه جواهری، ایرج صدیقی، مژگان ممانی، راضیه عزتی، جلال الدین امیری، مسعود سعیدی جم
    مقدمه

    همه گیری ها و مرگ ومیر ناشی از ویروس های آنفلوانزا در سراسر جهان یک نگرانی مهم به شمار می رود. استفاده از داروهای ضدویروسی مهارکننده نورامینیداز (NA) مانند اوسلتامی ویر، روش موثر و ارزشمندی در درمان این ویروس ها است، هرچند جهش در چند بخش از این ژن، موجب به وجود آمدن سویه های مقاوم به دارو می شود و افزایش روزافزون سویه های مقاوم به دارو یک مشکل جهانی است. یکی از شایع ترین جهش های مقاومت دارویی به اوسلتامی ویر، جهش جایگزینی اسید آمینه هیستیدین به تیروزین در موقعیت 275 (H275Y) در پروتیین نورامینیداز است. هدف این مطالعه شناسایی جهش H275Y در ویروس های آنفلوانزای A/H1N1 در گردش در استان همدان با استفاده از روش Real-time RT PCR بود.

    مواد و روش ها

    این مطالعه به صورت مقطعی روی 110 نمونه سواب مشکوک به ویروس آنفلوانزا جداشده بین سال های 1395-1394 انجام شد. ابتدا RNA نمونه ها استخراج گردید و سپس برای تعیین تایپ و ساب تایپ ویروس آنفلوانزا، از روش Real-time RT PCR استفاده شد. پس از آن، نمونه های مثبت برای شناسایی جهش H275Y با روش Real-time RT PCR ارزیابی گردیدند.

    یافته ها:

     در این مطالعه از مجموع 110 بیمار، 50 (45 درصد) نفر زن و 60 (55 درصد) نفر مرد بودند. میانگین سنی شرکت کنندگان در این پژوهش برابر با 42/2±74/40 سال بود. ویروس آنفلوانزا A/H1N1 در 22 نفر (20 درصد موارد) یافت شد، به این صورت که 13 مورد (7/21 درصد) در مردان و 9 مورد (18 درصد) در زنان مشاهده گردید. در بررسی ارتباط میان جنس و ابتلا به ویروس آنفلوانزا، رابطه معنی داری دیده نشد (P=0.81)؛ همچنین باید اشاره کرد که از مجموع 22 نمونه مثبت، در هیچ کدام از موارد جهش مقاومت دارویی H275Y مشاهده نگردید.

    بحث و نتیجه گیری: 

    یافته های مطالعه نشان داد که هیچ جهش مقاومت دارویی اتفاق نیفتاده است و همچنان داروی اوسلتامی ویر گزینه مناسبی برای درمان این ویروس در همدان است؛ اما با توجه به افزایش روزافزون سویه های مقاوم، بررسی سالیانه مقاومت به این دارو توصیه می گردد و به مطالعات بیشتری در این زمینه نیاز است.

    کلید واژگان: اوسلتامی ویر, مقاومت دارویی, ویروس آنفلوانزای A, H1N1
    Shahab Mahmoudvand, Razieh Amini*, Farid Azizi Jalilian, Mojtaba Hedayat Yaghoobi, Masoumeh Javaheri, Iraj Sedighi, Mojgan Mamani, Razieh Ezati, Jalaledin Amiri, Massoud Saidijam
    Introduction

    Epidemics and deaths caused by influenza viruses are an important concern worldwide. The use of neuraminidase inhibitors such as oseltamivir is an effective and valuable way to treat the diseases caused by these viruses. However, the mutation in several parts of the gene leads to the emergence of drug-resistant strains, and an ever-increasing rise in drug-resistant strains is a global problem. Histidine-to-tyrosine mutation at position 275 (H275Y) of neuraminidase protein is one of the most common oseltamivir resistance mutations. This study aimed to detect H275Y mutation in influenza A (H1N1) virus circulating in the Hamadan province of Iran using real-time polymerase chain reaction  (RT-PCR).

    Material & Methods

    This cross-sectional study was conducted on 110 swab samples isolated from patients with suspected influenza virus infection between 2015 and 2016. Ribonucleic acid (RNA) was extracted from samples and the RT-PCR method was used to determine virus types and subtypes. The positive samples were evaluated for detection of H275Y mutation using RT-PCR.

    Findings

    Out of 110 patients in this study, 50 (45%) were females and 60 (55%) were males. The mean±SD age of participants was 40.74±2.42 years. Influenza A (H1N1) virus was found in 22 (20%) out of 110 patients, including 9/50 (18%) females and 13/60 (21.7%) males. There was no significant relationship between the virus and gender (P=0.81). No drug resistance related to H275Y mutation was observed in 22 positive cases.

    Discussion & Conclusion

    The findings indicated that no drug resistance mutations have occurred, and oseltamivir is still an appropriate option to treat infections caused by the influenza virus in Hamadan province, Iran. However, due to the increasing number of resistant strains, an annual review of oseltamivir resistance is recommended and further studies are needed in this regard.

    Keywords: Drug resistance, Influenza A (H1N1) virus, Oseltamivir
  • Alireza Khalilian, Pezhman Karami, Somayeh Bakhtyari, Razieh Ezati, Sara Khosravi, Razieh Amini, Seyed Saman Talebi, Fatemeh Torkaman Asadi, Maryam Fazeli, Somayeh Soleimani, Shahab Mahmoudvand, Hadi Ghasemi, Shadi Baniardalan, Farid Azizi Jalilian
    Background

    Helicobacter pylori (H. pylori ) has various strains associated with human infections. H. pylori , H. heilmannii, and H. felis are the most common strains in humans. H. pylori is associated with several human diseases such as chronic gastritis, peptic ulcer, mucous membrane lymphoma, and gastric adenocarcinoma. This study aimed to determine the prevalence rates of H. felis and H. heilmannii and the effect of co-infection with H. pylori in gastric biopsy specimens of patients.

    Methods

    Totally, 80 gastric biopsy specimens were taken by a physician from the patients referred to Shahid Beheshti Hospital, Hamadan City, Iran. PCR test was used to confirm the presence of H. pylori in samples that had positive rapid urease tests. Moreover, the ureB gene and ureA and ureB genes were used for H. heilmannii and H. felis , respectively.

    Results

    Of the study patients, 61.5% were females, and 38.5% were males with a mean age of 37.8 years. Of 80 biopsies, 50% were H. pylori -positive, 53.8% were H. heilmannii-positive, but no H. felis was identified in any sample. Results indicate that smoking, having a history of gastrointestinal diseases, and taking certain medications can be risk factors for H. pylori .

    Conclusion

    Any agent contributing to gastric mucosal damage can enhance the susceptibility to bacterial contamination. Overall, the results indicate a low probability of interactions between H. pylori , H. heilmannii, and H. felis .

    Keywords: Helicobacter pylori, Helicobacter heilmannii, Helicobacter felis, Co-infectio
  • Mohammad Hasan Soheilifar, Majid Pornour, Massoud Saidijam, Rezvan Najafi, Farid Azizi Jalilian, HodaKeshmiri Neghab, Razieh Amini*
    Introduction

    Colorectal cancer (CRC) is the third most common cancer in the world with high mortality, hence, understanding the molecular mechanisms involved in the tumor progression are important for CRC diagnosis and treatment. MicroRNAs (miRNAs) are key gene expression regulators that can function as tumor suppressors or oncogenes in tumor cells, and modulate angiogenesis as a critical process in tumor metastasis. MiR-1290 has been demonstrated as an onco-miRNA in various types of cancer, however, the role of miR-1290 in CRC is not fully understood. This study aimed to investigate the oncogenic and angiogenic potential of miR-1290 in CRC.

    Methods

    Lenti-miR-1290 was transduced into HCT116, SW480, and human umbilical vein endothelial cells (HUVECs). By bioinformatics analysis, we identified thrombospondin 1 (THBS1) as a novel predicted target for miR-1290. Quantitative real-time PCR, western blotting, and luciferase reporter assay were used to demonstrate suppression of miR-1290 target genes including THBS1, Dickkopf Wnt signaling pathway inhibitor 3 (DKK3), and suppressor of cancer cell invasion (SCAI) in HCT116 and HUVECs. Cell cycle analysis, proliferation, migration and, tube formation were determined by flow cytometry, MTT, wound healing, and tube formation assays, respectively.

    Results

    MiR-1290 significantly decreased the expression of THBS1, DKK3, and SCAI. We demonstrated that miR-1290 enhanced proliferation, migration, and angiogenesis partially through suppression of THBS1, DKK3, and SCAI in CRC.

    Conclusion

    These results suggest a novel function of miR-1290 which may contribute to tumorigenesis and angiogenesis in CRC.

    Keywords: miR-1290, THBS1, DKK3, SCAI, Oncogenesis, Angiogenesis
  • Shiva Borzouei, Farid Azizi Jalilian, Fereshteh Mehri, Saeid Bashirian, Fatemeh Torkaman Asadi‬, Salman Khazaei*
    Background and Objectives

    Clinical evidence on the nutritional statuses of COVID-19 patients and their associations with COVID-19 clinical outcomes are limited. To the best of the authors’ knowledge, no studies have been carried out on COVID-19 patients of Iranian population. Therefore, the aim of this study was to assess vitamin D, vitamin B12, RBP, zinc, selenium, copper and magnesium levels in patients with COVID-19. Furthermore, associations of nutrient levels with the disease-linked death were investigated.

    Materials and Methods

    This cross-sectional study was carried out in hospitals affiliated to Hamadan University of Medical Sciences, Hamadan, Iran, on 98 COVID-19 positive patients, March to May 2020. Demographic and clinical data of the patients were collected from their clinical records. Blood samples of 5 ml were collected from the patients, which were used for hospital routine laboratory assays as well as measuring trace elements and vitamins. Comparison of chemical biomarkers based on the patient’s treatment outcomes was carried out using Mann-Whitney U test. For data analysis, Stata Software v.14 was used.

    Results

    From 98 COVID-19 positive patients, 16 (13.33%) patients died during the treatment. These patients had higher proportions of heart diseases (37.5% against 10.98%, p = 0.007). Moreover, the median of white blood cell counts was significantly higher in patients, who died during treatment (p = 0.002). For vitamin D3, vitamin B12, RBP, zinc, selenium, cupper and magnesium, 59.2, 12.24, 53.08, 30.61, 88.71, 16.33 and 26.53% of the patients had values below the reference value ranges of these elements, respectively. Comparison of chemical biomarkers based on the patient’s treatment outcomes did not show significant differences (p > 0.05).

    Conclusions

    Although results of this study did not show significant differences between the levels of the trace elements and vitamins with the outcomes in COVID-19 patients due to the small sample size of the present study, assessment of these relationships needs stronger evidence by designing large studies.

    Keywords: COVID-19, Vitamin D, Vitamin B12, Zinc, Selenium, Copper, Magnesium, Iran
  • بهاره سیفی، هادی حسین پور، سارا کوتی، فرید عزیزی جلیلیان*
    زمینه و اهداف

      امروزه یکی از مشکلات سیستم های بهداشتی وجود سوسری ها در بیمارستان ها به عنوان حشراتی است که آزادانه در داخل و خارج از بیمارستان حرکت می کنند و به باکتری های بیماری زا آلوده می شوند. هدف از این مطالعه شناسایی ژن های مقاومت به کارباپنم در باکتری اشرشیا کلی جدا شده از سوسری آلمانی(Blatella germanica) به روش دات بلات در بیمارستان های همدان در غرب ایران بود.

    مواد و روش کار

      تعداد 109 سوسری آلمانی از فروردین تا شهریور 1397 از بخش های مراقبت ویژه بیمارستان های مختلف استان همدان که در غرب ایران واقع است، جمع آوری شد. شناسایی سوسری های آلمانی به کمک کلید های تشخیص قابل اعتماد توسط کارشناس حشره شناسی، انسکتاریوم دانشگاه علوم پزشکی همدان، ایران انجام شد. تست حساسیت ضد میکروبی توسط روش دیسک دیفیوژن انجام شد. از روش دات بلات برای شناسایی ژن های مقاومت در اشریشیا کلی جدا شده از سوسری آلمانی استفاده شد.

    یافته ها

      از 109 نمونه سوسری آلمانی جمع آوری شده از بخش های مراقبت ویژه بیمارستان های مختلف شهر همدان، 31 نمونه (28/44 درصد) از نظر اشریشیا کلی مثبت بودند. بیشترین فراوانی مقاومت آنتی بیوتیکی در برابر آمپی سیلین (100%) و کمترین مقاومت به ایمی پنم در دو جدایه (6/45%) مشاهده شد. فراوانی ژن ها در جدایه های اشریشیا کلی در سوسری آلمانی به شرح زیر بود: ژن blaNDM (چهار ایزوله، 3/66 درصد)،bla OXA-48(یک ایزوله: 0/92%) و سایر ژن های مورد مطالعه در هیچ یک از سویه ها مشاهده نشد.

    نتیجه گیری

    سوسری ها عامل مهمی برای انتقال انتروباکترال ها و همچنین سویه های مقاوم به چند دارو (MDR) هستند. بنابراین، اقدامات پیشگیرانه و کنترل موثر برای کاهش بیماری های منتقله از طریق ناقل مورد نیاز است.

    کلید واژگان: مقاومت دارویی ضد میکروبی, Blatella germanica, سنجش دات بلات, اشریشیا کلی, سوسری آلمانی
    Bahareh Seyfi, Hadi Hossainpour, Sara Kooti, Farid Azizi Jalilian*
    Background and Objective

     Today, one of the problems of health systems is the presence of cockroaches in hospitals as insects that move freely in and out of the hospitals and are infected with pathogenic bacteria. The aim of this study was to identify carbapenem resistance genes in Escherichia coli isolated from Blattella germanica by dot blot assay in Hamadan hospitals in the west of Iran.

    Methods

     A total of 109 B. germanica from April to September 2018 were collected from ICUs of different hospitals in the Hamadan province, located in western Iran. The B. germanica were identified using reliable taxonomic keys by an expert in the Department of Entomology, insectarium Hamadan University of Medical Sciences, Iran. The antimicrobial susceptibility test was determined by disk diffusion. The dot blot assay was used to identify resistance genes in E. coli isolated from B. germanica.

    Results

    Out of 109 B. germanica samples collected from ICUs of different hospitals in Hamadan, 31 samples (28.44%) were positive for E. coli. The highest frequency of antibiotic resistance against ampicillin (100%) and the lowest resistance to imipenem was observed in two isolates (6.45%). The frequency of genes among E. coli isolates in B. germanica was as follows: bla NDM (4 isolates: 3.66%), bla OXA-48 (one isolate: 0.92%), and other studied genes were not observed in any of the strains.

    Conclusion

     Cockroaches are an important factor in transmitting Enterobacterales and multidrug-resistant (MDR) strains. Therefore, effective preventive and control measures are needed to reduce vector-borne diseases.

    Keywords: Antimicrobial drug resistance, Blatella germanica, Dot blot assay, Escherichia coli, German cockroaches
  • Massoumeh Zargaran *, Farid Azizi Jalilian
    Statement of the Problem

    Oral health status has been suggested as one of the possible risk factors for oral human papillomavirus (OHPV) infection. There is inconsistent evidence concerning its relationship with the presence of OHPV.

    Purpose

    This study aimed to compare oral health status between two groups of patients with and without OHPV infection.

    Materials and Method

    This cross-sectional study was performed on 272 oral rinse samples, collected from our previous study population. After signing the written informed consents, the oral examination was performed to determine some clinical parameters of oral health status including periodontal disease status, oral hygiene status, decayed, missing, and filled teeth (DMFT) of participants. Next, viral deoxyribonucleic acid (DNA) extraction, polymerase chain reaction (PCR), and HPV genotyping tests were performed on the samples.

    Results

    OHPV DNA was detected in a total 31 (11.40%) samples that were considered as OHPV+ group. None ofthe determined clinical parameters of oral health status was significantly different between OHPV+ and OHPV DNA negative (OHPV-) groups (p> 0.05).

    Conclusion

    The findings of the current study did not indicate a significant association between oral health status and OHPV. Further studies with larger sample size are recommended to reach a definite conclusion.

    Keywords: Oral health, Human papillomavirus, oral cavity, infection
  • Somayeh Shokri, Shahab Mahmoudvand, Manoochehr Makvandi, Reza Taherkhani, Mohammad Rashno, Farid Azizi Jalilian, Kambiz Ahmadi Angali, MohammadAli Foroughi

    More than 99% of cervical cancers are associated with human papillomaviruses (HPVs) worldwide. Current HPV vaccines are safe, highly immunogenic, with effective immunity against specific HPV types. However, DNA vaccines are a new appealing platform which can be considered for designing the HPV vaccines. This study aimed to construct a recombinant eukaryotic expression plasmid containing L1 of HPV-18, tissue plasminogen activators (tPA), and pan HLA DR-binding epitope (PADRE) genes into the pVAX1 vector. The L1, tPA, and PADRE genes were amplified in a thermocycler. The polymerase chain reaction (PCR) products were cloned and insertion of the genes was confirmed using colony PCR, restriction enzymes analysis, and sequencing methods. Indirect immunofluorescence, RT-PCR, and western blot assays were applied to identify the target gene in HEK-293 cells. Total IgG and its isotypes in immunized mice were measured by enzyme-linked immunosorbent assay technique. Western blot analysis showed a protein band of about 67.5 kDa in supernatant and cell lysate of transfected cells. The results of mice immunization with different constructs (group 1: the pVAX-L1, group 2: pVAX-tPA-PADRE-L1, group 3: pVAX1, and group 4: PBS as controls) indicated that the pVAX1-tPA-PADRE-L1 construct induced a significantly higher level of total IgG than pVAX1-L1 (p=0.003). In conclusion, pVAX1-tPA-PADRE-L1 recombinant plasmid is a highly immunogenic construct and suggests as a promising candidate for vaccine development against HPV type 18 in low-middle-income countries.

    Keywords: Alphapapillomaviruses, DNA vaccines, Indirect fluorescent antibody technique, Polymerase chain reaction, Uterine cervical neoplasms, Western blotting
  • Razieh Dehghan, Mohammad Hasan Soheilifar, Farid Azizi Jalilian, Rezvan Najafi, Razieh Amini*
  • Maryam Fazeli, Saman Pazira, Behzad Pourhossein, Azadeh Rasooli, Nastaran Ansari, Farid Azizi Jalilian
    Background

    Ruthin's coronavirus disease 2019 (COVID-19) diagnosis is based on the positive result of real-time polymerase chain reaction (PCR) from the nasal and oropharyngeal swab. However, chest CT scans can play an important role in diagnosing patients with COVID-19.

    Cases Report:

    In this study, we reported a 44 years old female with a mild form of the COVID-19 who showed a positive result for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA for 44 days after symptom onset. The suspected case was detected using real-time PCR. After two weeks of hospitalization, the patient was discharged, but her molecular tests were performed twice after one month and 44 days, and they remained positive for SARS-CoV-2 RNA.

    Conclusion

    In theory, if the patient becomes re-infected or the virus reacts, these individuals may serve as a transmission source. So far, the only way to screen for possible reinfection has been by using PCR on separate specimens.

    Keywords: COVID-19, Real-time polymerase chain reaction, Patient outcome assessment
  • Sima Nobari, MohammadHasan Soheilifar, Hoda Keshmiri Neghab, Farid Azizi Jalilian, Fatemeh Bahreini, Razieh Amini*
    Background

    MicroRNAs (miRNAs) are small noncoding RNAs (containing approximately 22 nucleotides), which modulate and control the expression of target genes by binding them. MiRNAs play a crucial role in tumorigenesis. Thus, alterations in the expression level of miRNAs play a key role in the pathobiology of numerous cancers. In this research, the expression level of MicroRNA-1290 (miR-1290) and its target genes THBS1 and DKK3 were evaluated in colorectal cancer (CRC) patients.

    Methods

    This case-control study was carried out on 144 paraffin-embedded tissue samples of CRC and adjacent tissues from patients who referred to Imam Khomeini Hospital, Tehran, Iran. Total RNA was isolated from the tissue using Trizol reagent following the manufacturer's instructions and then reverse transcribed to cDNA. The expression of miR-1290 and its target genes was measured by quantitative Real-Time PCR (qRT-PCR). Statistical analyses were performed using SPSS V.20 statistical software.

    Results

    We present evidence that the miR-1290 expression in CRC tissues was significantly higher than in the normal margin, and its targets were downregulated in tumor tissue compared to the adjacent tissue.

    Conclusion

    This study supports the essential role of miR-1290 and its contribution to CRC invasion and metastasis through targeting THBS1 and DKK3, as biomarkers for CRC diagnosis.

    Keywords: Colorectal Cancer, MiR-1290, THBS1, DKK3
  • Faezeh Fouladvand, Peyman Bemani, Mozafar Mohammadi *, Razieh Amini, Farid Azizi Jalilian

    Bacteriophages, viruses which infect the bacteria are the most abundant organisms on the earth. Among them, the best studied and the most-exploited group is the filamentous phages especially M13 phage. They have shown a lot of interesting applications because of their unique features. Therefore, to get maximum performance of bacteriophage like M13, techniques need to be engaged for proper concentrations. In this review, most of these methods were explored in PubMed, Scopus and Google Scholar, using keywords including M13 bacteriophage, phage concentration, phage purification, phage display. Accordingly, the most important research papers about this subject have been collected, categorized and discussed. As a conclusion, to select an appropriate method for the concentration of M13 bacteriophages different criteria should be considered, including cost, equipment, yield and purity of the product. In general, subsequent applications of M13 phage is the most important factor for the selection of the concentration method.

    Keywords: M13 Bacteriophage, Phage Concentration, Phage Purification, phage display, Phage Precipitation
  • Maryam Ahmadi*, Farid Azizi Jalilian, Negar Dokhani, Mitra Golparian, Younes Moradi
    Objectives

    Human papillomaviruses (HPVs) are a group of non-enveloped viruses which contain double-stranded DNA, and have widespread prevalence in human populations. The aim of this study was to evaluate the prevalence of HPV in asymptomatic patients at the Women’s Clinic in Hamadan and compare the two techniques of Pap smear and Polymerase chain reaction (PCR) in detecting the virus.

    Materials and Methods

    This epidemiologic study was carried out on 1770 asymptomatic patients at the Women’s Clinic in Hamadan. After collecting the cell samples from the cervical areas, they were placed in a pre-prepared medium by a physician and divided into two sections after being sent to the laboratory; the first part was for Pap smear and the second for PCR. If there was a viral genome, it could be determined by PCR. People who were HPV + were candidates for typing.

    Results

    The results of the present study showed that out of 1770 patients aged between 14 and 60 years, referred to Hamadan health centers, 271 patients (15.31%) had HPV. Among them, the highest number of HPV+ cases belonged to the age group of 31-40 years, with the lowest number belonging to the age group of 15-20 years old. Furthermore, out of 271 HPV + patients, 111 (40.09%) had abnormal Pap smear and more than 90% had HPV infection, while less than 10% had low risk (LR) HPV.

    Conclusions

    The results of this study showed that the prevalence of HPV in Hamadan health centers was relatively high. According to the results of this study, it can be concluded that the use of PCR along with Pap smear can help the patients with diagnosis and better treatment

    Keywords: HPV, Prevalence, Pap smear, PCR, Asymptomatic patient
  • Fateme Karimi Dermani, Farid Azizi Jalilian, Hossein Hossienkhani, Razieh Ezati, Razieh Amini *
    Small interfering RNAs (siRNA) technology has shown great promise as a new class of therapeutic interventions for the treatment of cancer and other diseases. It is a remarkable endogenous pathway that can regulate sequence-specific gene silencing. Despite the excitement about possible applications of this biological process for sequence-specific gene regulation, the major limitations against the use of siRNA-based therapeutics are their rapid degradation by serum nuclease, poor cellular uptake, and rapid renal clearance following systemic delivery, off-target effects and the induction of immune responses. Many researchers have tried to overcome these limitations by developing nuclease-resistant chemically-modified siRNAs and a variety of synthetic and natural biodegradable lipids and polymers to enhance the efficacy and safety profiles of siRNA delivery. Ideal siRNA-based delivery systems for cancer therapy must be clinically suitable, safe and effective. In this review, we introduce the greatest challenges in achieving efficient RNAi delivery and discuss design criteria and various delivery strategies for cancer therapy, including chemical modifications, lipid-based nano-vectors, polymer-mediated delivery systems, conjugate delivery systems, and others.
    Keywords: Small interfering RNA (siRNA), Cancer therapy, Delivery systems, Nanoparticles
  • Farid Azizi Jalilian, Masoud Parvin, Meysam Olfatifar *, Hossein Erfani, Jalal Bathaei
    Aim
    This study was conducted to provide a clear epidemiological picture of HCV spatial pattern.
    Background
    Hepatitis C virus (HCV) is one of the major problems of public health, that its spatial and spatiotemporal pattern remain unclear in Hamadan province.
    Methods
    We used the scan statistic to identify the spatial and spatiotemporal clusters of HCV in Hamadan province with an emphasis on considering the role of carrier's and injecting drug users (IDUs) cases. We repeated the same analysis to estimate the effect of some influencing factors on the formation of clusters. All HCV cases that had been recorded by deputy health of Hamadan University of Medical Sciences during 2008-2016 were included in this study.
    Results
    The location of the purely spatial cluster for carriers, IDUs and total of cases were similar to each other, a cluster consisting of Toyserkan, Nahavand, Asadabad, Malayer and Bahar cities. However, after adjustment, the location of the identified cluster for both carries and IDUs cases changed to a cluster consisting of Asadabad, Bahar, Toyserkan and Nahavand cities. This cluster also observed for spatiotemporal clusters carriers, IDUs and total of cases even after adjustment.
    Conclusion
    Although further studies in individual level are needed, our results revealed that spatial distribution of HCV in Hamadan province (especially in clusters areas) can strongly dependent on the distribution of IDUs cases. Consequently, the effectiveness of HCV combating programs is subjected to properly controlling these case through various counseling, behavioral and therapeutic programs.
    Keywords: Hepatitis C virus_Spatial analysis_Injecting drug users_Hamadan province
  • Milad Azami, Farid Azizi Jalilian, Mohammad Reza Adhami Mojarad, Younes Mohammadi, Zeinab Tardeh *
    Context: Recent studies on patients with psychiatric disorders suggest a possible association between borna disease virus (BDV) and mood disorders. However, a clear association remains controversial. The current systematic review and meta-analysis study aimed at investigating the association between BDV infection and mood disorders.
    Methods
    The current study was conducted based on preferred reporting items for systematic reviews and meta-analyses (PRISMA) guidelines. To obtain the evidence, several databases were searched including PubMed, Scopus, ScienceDirect, Web of Science, Embase, Cochrane Library, PsycINFO, and Google Scholar search engine without time limit until 2017. Heterogeneity of the studies was assessed using Q test and I2 index. A random effect model was used to estimate the odds ratio (OR) with 95% confidence interval (CI).
    Results
    Meta-analysis of 23 studies comprising 3628 cases and 5,810 controls showed that BDV infection was associated with a significantly increased risk of mood disorders (OR = 1.61; 95%CI: 1.21 - 2.15, P = 0.001, I2 = 44%). Subgroup analysis was used according to diagnostic method indicating OR was 1.01 (95%CI: 0.37 - 2.8) for immunofluorescence antibody (IFA), 1.26 (95%CI: 0.5 - 3.18) for western blot (WB) assay, 1.58 (95%CI: 1.06 - 2.38) for real-time polymerase chain reaction (RT-PCR), 1.16 (95%CI: 0.24 - 5.70) for radioligand assay (RLA), 2.55 (95%CI: 1.67 - 3.88) for enzyme immunoassay (EIA), 2.15 (95%CI: 0.68-6.80) for enzyme-linked immunosorbent assay (ELISA), 3.29 (95%CI: 1.35 - 7.98) for electrochemiluminescence immunoassay (ECLIA), 4.00 (95%CI: 0.89 - 17.87) for peptide array, and 1.00 (95%CI: 0.23 - 4.27) for proliferation assay method. In subgroup analysis of bipolar and unipolar disorder, OR was 1.99 (95%CI: 1.29 - 3.08, P = 0.002) and 1.16 (95%CI: 0.76 - 1.76, P = 0.481), respectively.
    Conclusions
    These results can confirm the significant role of BDV infection in mood disorders. Therefore, it might be necessary to consider BDV infection to manage psychiatric disorders.
    Keywords: Borna Disease Virus, Mood Disorder, Meta, Analysis
  • فرانک خلجی مقیم، امیر صادقی، هما خجسته فر، فاطمه فدایی، محمد ابراهیم غفاری، فرید عزیزی جلیلیان *
    مقدمه
    درس ویروس شناسی ازدروس با اهمیت در رشته های علوم پزشکی است که آموزش ناکافی آن می تواند موجب کاهش مهارت های تشخیصی بیماری های ویروسی در کلینیک و آزمایشگاه گردد، در حالی که در بسیاری از دانشگاه های علوم پزشکی این درس به صورت بخش کوچکی از آموزش میکروبیولوژی ارائه می شود. این مطالعه با هدف بررسی دیدگاه دانشجویان رشته های پزشکی و علوم آزمایشگاهی همدان و کرمانشاه در مورد ضرورت بازنگری درس ویروس شناسی انجام گردید.
    روش ها
    پژوهش توصیفی مقطعی حاضر، با مشارکت دانشجویان دوره کارآموزی و کارورزی رشته پزشکی و دانشجویان سال آخر علوم آزمایشگاهی در دو دانشگاه علوم پزشکی همدان و کرمانشاه به صورت سرشماری از 275 دانشجو در نیمسال اول 1395انجام شد. داده ها توسط پرسشنامه ای محقق ساخته جمع آوری گردید و داده ها با استفاده از روش آمار توصیفی و آزمون t نمونه های مستقل و من ویتنی، تحلیل شد.
    نتایج
    اکثر دانشجویان پزشکی 154نفر (7/80%) و دانشجویان علوم آزمایشگاهی 67 نفر (8/79%) از) درس ویروس شناسی را جزء دروس با اهمیت می دانستند؛ همچنین 94 نفر (3/49%) از دانشجویان پزشکی و40 نفر (6/47%) از دانشجویان علوم آزمایشگاهی با افزایش تعداد واحد این درس موافق بودند. نتایج نشان داد بین نمرات دیدگاه دانشجویان علوم آزمایشگاهی تنها در حیطه ی محیط آموزشی تفاوت معناداری بین دو جنس دیده شد (026/0=P) ، اما بین نمرات دیدگاه دانشجویان پزشکی در دو جنس در هیچ کدام از حیطه ها تفاوت معناداری مشاهده نشد.
    نتیجه گیری
    بر اساس یافته ها دانشجویان ویروس شناسی را جزء دروس با اهمیت در رشته خود می دانستند و با تغییر و بازنگری در سرفصل ها و واحد درس موافق بودند. با توجه به اهمیت و کاربرد درس ویروس شناسی در بالین، بازنگری در برنامه آموزشی این درس ضروری به نظر می رسد.
    کلید واژگان: دانشجویان, علوم پزشکی, ویروس شناسی
    Faranak Khalaji Moqim, Amir Sadeqi, Homa Khojasteh Far, Fatemeh Fadaei, Mohammad Ebrahim Qaffari, Farid Azizi Jalilian *
    Introduction
    Virology is one of the most important courses in medical sciences programs, so that teaching it improperly would lead to reduced skills of viral disease diagnosis in clinics and labs. Nevertheless, virology is offered as a small part of microbiology course in most medical schools. Hence the purpose of this paper was to investigate medical and MLS students’ perspective on the necessity of revising the virology course at Hamedan and Kermanshah Universities of Medical Sciences.
    Methods
    This descriptive, cross-sectional research was conducted on medical apprentices and interns and senior MLS students at Hamedan and Kermanshah Universities of Medical Sciences in 2016. A total of 275 students were selected by means of census method. Data were collected by a researcher-made questionnaire and analyzed by means of descriptive statistics, independent t-test and Mann-Whitney test.
    Results
    Most of the medical (n=154, 80.7%) and MLS (n=67, 79.8%) students perceived virology as a very important course; moreover, 94 of the medical students (49.3%) and 40 of the MLS students (47.6%) agreed to more credits for this course. Findings showed a significant difference in gender between the scores of MLS students only in the educational environment area(p=0.026). However, no significant difference was found in gender between the scores of medical students in any of the areas.
    Conclusion
    Based on the findings, the students considered virology as one of the most important courses in their fields and agreed to the revision of syllabuses and credits. Given the clinical importance and application of the virology course, revision of the curriculum for this course seems necessary.
    Keywords: Medical students‚ virology, medical laboratory sciences Students, revision
  • Farid Azizi Jalilian, Mohammad Soleimani *, Mohsen Alemi, Arefeh Bashiri, Ghazaleh Haghighat
    PSA is the most routine marker to detect prostate cancer, but due to its low specificity that can lead to a number of unnecessary biopsies, there is great need for an alternate method. Can PCA3 be one of these methods? PCA3 is overexpressed in prostate cancer, not in benign conditions such as prostatitis (unlike PSA). Because of its efficacy (being more sensitive and specific in comparison with PSA), this biomarker could be a very useful and promising method for the early detection of prostate cancer, especially in combination with other tests such as TMPRSS2-ERG gene fusion.
    Keywords: Prostatic Specific Antigen, Prostate Cancer Antigen 3, Prostate Cancer, Prostate Cancer, Screening
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